imported>Sebotic at 23:49, 18 September 2015

2015-09-18T23:49:50Z

New page

local p = {}

function p.hello(frame)
entity = mw.wikibase.getEntityObject(frame.args[1])

infobox_string =
[[
{| class="wikitable"
|-
! Column 1 !! Column 2 !! Column 3
|-
| rowspan="2" | A
| colspan="2" style="text-align: center;" | B
|-
| C 
| D
|-
| E
| rowspan="2" colspan="2" style="text-align: center;" |F
|-
| G 
|-
| colspan="3" style="text-align: center;" | H
|}
]]

infobox_string2 = [[
{{infobox3cols
| headerstyle = background-color: #ddd
| labelstyle = background-color: #c3fdb8
| datastyle = background-color: #eee
| name = {{{path|}}}

| above = {{{Name|{{PAGENAME}} }}}
| subheader = {{{caption|}}}
| image = {{#invoke:InfoboxImage|InfoboxImage|image={{{image|}}}|size=250px|sizedefault=frameless|upright=1.14|alt={{{alt|}}}}}
| caption = {{{image_source|}}}

|data1={{#if:{{{PDB|}}}
| <table style="border: none; padding: 0; margin: 0; width: 100%; text-align: left">
<tr style="background-color: #ddd; text-align: center">
<th colspan=2>Available structures</th>
</tr>
<tr>
<th rowspan = "2" style="background-color: #c3fdb8; width:43px">]] .. "[[Protein Data Bank|PDB]]" .. [[</th>
<td colspan = "2" style="background-color: #eee"> {{#if:{{{Homologene|}}}|
Ortholog search: [http://www.ebi.ac.uk/pdbe/searchResults.html?display=both&term={{Homologene2PDBe|{{{Homologene}}}}} PDBe], [http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=UpAccessionIdQuery&accessionIdList={{Homologene2uniprot|{{{Homologene}}}}} RCSB]|
{{#if:{{{Hs_Uniprot|}}}|
Human UniProt search: [http://www.ebi.ac.uk/pdbe/searchResults.html?display=both&term={{{Hs_Uniprot}}} PDBe], [http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=UpAccessionIdQuery&accessionIdList=::{{{Hs_Uniprot}}} RCSB]
</td>
}}
}}
</tr>
<tr>
<td>
<table class="collapsible collapsed" style="border: none; padding: 0; margin: 0; width: 100%; text-align: left">
<tr style="background-color: #ddd; text-align: center">
<th colspan=2>List of PDB id codes</th>
</tr>
<tr>
<td colspan = "2" style="background-color: #eee">
{{{PDB}}}
</td>
</tr>
</table>
</td></tr>
</table>
}}

| header3 = Identifiers

| label4 = ]] .. "[[Human Genome Organisation|Symbol{{#if:{{#invoke:Sandbox/Sebotic/query_test|get_aliases}}|s}}]]" .. [[
| data4 = [http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id={{#invoke:Wikidata|getValue|P354|{{{entrez|FETCH_WIKIDATA}}} }} {{#invoke:Wikidata|getValue|P353|{{{entrez|FETCH_WIKIDATA}}} }}]{{#if: {{#invoke:Sandbox/Sebotic/query_test|get_aliases}} | {{#invoke:Sandbox/Sebotic/query_test|get_aliases}} }}
| label5 = External IDs
| data5 = {{#if:{{{OMIM|}}}|{{OMIM5|{{{OMIM}}} }} }} {{#if:{{{MGIid|}}}|{{MGI|{{{MGIid}}} }} }} {{#if:{{#invoke:Wikidata|getValue|P593|{{{entrez|FETCH_WIKIDATA}}} }}|{{Homologene|{{#invoke:Wikidata|getValue|P593|{{{entrez|FETCH_WIKIDATA}}} }} }} }} {{#if:{{{IUPHAR|}}}|]] .. "[[International Union of Basic and Clinical Pharmacology|IUPHAR]]" .. [[: {{IUPHAR|{{{Symbol}}} }} }} {{#if:{{{ChEMBL|}}}|]] .. "[[ChEMBL]]" .. [[: [https://www.ebi.ac.uk/chembldb/index.php/target/inspect/CHEMBL{{{ChEMBL}}} {{{ChEMBL}}}] }} {{#if:{{#invoke:Wikidata|getValue|P351|{{{entrez|FETCH_WIKIDATA}}} }}|]] .. "[[GeneCards]]" .. [[: [http://www.genecards.org/cgi-bin/carddisp.pl?id_type=entrezgene&id={{#invoke:Wikidata|getValue|P351|{{{entrez|FETCH_WIKIDATA}}} }} {{#invoke:Wikidata|getValue|P353|{{{entrez|FETCH_WIKIDATA}}} }} Gene] }}

| label6 = ]] .. "[[Enzyme Commission number|EC number]]" .. [[
| data6 = {{#if:{{{ECnumber|}}}|[http://www.genome.jp/dbget-bin/www_bget?enzyme+{{#invoke:String|replace|{{{ECnumber}}}|,%s*|+|plain=false}} {{{ECnumber}}}]}}

| data7 = <table class="collapsible collapsed" style="border: none; padding: 0; margin: 0; width: 100%; text-align: left">
<tr style="background-color: #ddd;">
<th colspan=2 style="text-align: center">]] .. "[[Gene ontology]]" .. [[</th>
</tr>
{{#if:{{{Function|}}}|
<tr>
<th style="background-color: #c3fdb8">Molecular function</th>
<td style="background-color: #eee">{{{Function}}}</td>
</tr>
}}
{{#if:{{{Component|}}}|
<tr>
<th style="background-color: #c3fdb8">Cellular component</th>
<td style="background-color: #eee">{{{Component}}}</td>
</tr>
}}
{{#if:{{{Process|}}}|
<tr>
<th style="background-color: #c3fdb8">Biological process</th>
<td style="background-color: #eee">{{{Process}}}</td>
</tr>
}}
{{#if:{{{Hs_Uniprot|}}}|
<tr>
<td style="background-color: #eee;text-align:center;" colspan="2" >Sources: [http://amigo.geneontology.org/cgi-bin/amigo/gp-assoc.cgi?gp=UniProtKB:{{{Hs_Uniprot}}} Amigo] / [http://www.ebi.ac.uk/QuickGO/GProtein?ac={{{Hs_Uniprot}}} QuickGO]</td></tr>
}}
</table>

| header8 = {{#if:{{#invoke:Wikidata|getValue|P692|{{{entrez|FETCH_WIKIDATA}}} }}|RNA expression pattern }}

| data9 = {{#invoke:InfoboxImage|InfoboxImage|image={{#invoke:Wikidata|getValue|P692|{{{entrez|FETCH_WIKIDATA}}}
}}|sizedefault=frameless|upright=1.14}}

| data10 = {{#invoke:InfoboxImage|InfoboxImage|image={{{GeneAtlas_image2|}}}|sizedefault=frameless|upright=1.14}}

| data11 = {{#invoke:InfoboxImage|InfoboxImage|image={{{GeneAtlas_image3|}}}|sizedefault=frameless|upright=1.14}}

| data12 = {{#if:{{#invoke:Wikidata|getValue|P692|{{{entrez|FETCH_WIKIDATA}}} }}|[http://biogps.org/gene/{{#invoke:Wikidata|getValue|P351|{{{entrez|FETCH_WIKIDATA}}} }}/ More reference expression data]}}

| header13 = {{#if:{{{Protein_domain_image|}}}|Protein domains}}

| data14 = {{#invoke:InfoboxImage|InfoboxImage|image={{{Protein_domain_image|}}}|sizedefault=frameless|upright=1.14}}

| header15 = Orthologs

| data16 = {{{Orthologs|}}}

| label17 = Species
| data17a = '''Human'''
| data17b = '''Mouse'''

| label18 = ]] .. "[[Entrez]]" .. [[
| data18a = {{#if:{{#invoke:Wikidata|getValue|P351|{{{entrez|FETCH_WIKIDATA}}} }}|[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=retrieve&dopt=default&list_uids={{#invoke:Wikidata|getValue|P351|{{{entrez|FETCH_WIKIDATA}}} }}&rn=1 {{#invoke:Wikidata|getValue|P351|{{{entrez|FETCH_WIKIDATA}}} }}]|n/a }}
| data18b = {{#if:{{#invoke:Wikidata|getValue|P684|from={{#invoke:Wikidata|getValue|P351}} }}
|[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=retrieve&dopt=default&list_uids={{{Mm_EntrezGene}}}&rn=1 {{#invoke:Wikidata|getValue|P684|from={{#invoke:Wikidata|getValue|P351}} }}
]|n/a }}

| label19 = ]] .. "[[Ensembl]]" .. [[
| data19a = {{#if:{{#invoke:Wikidata|getValue|P594|{{{entrez|FETCH_WIKIDATA}}} }}|[http://www.ensembl.org/Homo_sapiens/geneview?gene={{#invoke:Wikidata|getValue|P594|{{{entrez|FETCH_WIKIDATA}}} }};db=core {{#invoke:Wikidata|getValue|P594|{{{entrez|FETCH_WIKIDATA}}} }}]|n/a}}
| data19b = {{#if:{{{Mm_Ensembl|}}}|[http://www.ensembl.org/Mus_musculus/geneview?gene={{{Mm_Ensembl}}};db=core {{{Mm_Ensembl}}}]|n/a}}

| label20 = ]] .. "[[UniProt]]" .. [[
| data20a = {{#if:{{{Hs_Uniprot|}}}|{{Uniprot|{{{Hs_Uniprot}}}}}|n/a}}
| data20b = {{#if:{{{Mm_Uniprot|}}}|{{Uniprot|{{{Mm_Uniprot}}}}}|n/a}}

| label21 = RefSeq (mRNA)
| data21a = {{#if:{{#invoke:Wikidata|getValue|P639|{{{entrez|FETCH_WIKIDATA}}} }} span class="plainlinks" style="white-space: nowrap">[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val{{#invoke:Wikidata|getTAValue|P639|{{{entrez|FETCH_WIKIDATA}}} }} {{#invoke:Wikidata|getTAValue|P639|1|{{{entrez|FETCH_WIKIDATA}}} }}]|n/a}}
| data21b = {{#if:{{{Mm_RefseqmRNA|}}}|[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Mm_RefseqmRNA}}} {{{Mm_RefseqmRNA}}}]|n/a}}

| label22 = RefSeq (protein)
| data22a = {{#if:{{{Hs_RefseqProtein|}}}|[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Hs_RefseqProtein}}} {{{Hs_RefseqProtein}}}]|n/a}}
| data22b = {{#if:{{{Mm_RefseqProtein|}}}|[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Mm_RefseqProtein}}} {{{Mm_RefseqProtein}}}]|n/a}}

| label23 = Location (UCSC)
| data23a = {{#ifexpr:{{#if:{{{Hs_GenLoc_chr|}}}|1|0}}*{{#if:{{{Hs_GenLoc_start|}}}|1|0}}*{{#if:{{{Hs_GenLoc_end|}}}|1|0}}|[http://genome.ucsc.edu/cgi-bin/hgTracks?org=Human{{#if:{{{Hs_GenLoc_db|}}}|&db={{{Hs_GenLoc_db}}}|}}&position=chr{{{Hs_GenLoc_chr}}}:{{{Hs_GenLoc_start}}}-{{{Hs_GenLoc_end}}} Chr {{{Hs_GenLoc_chr}}}: {{#expr:{{{Hs_GenLoc_start}}} / 1000000 round 2}} – {{#expr:{{{Hs_GenLoc_end}}} / 1000000 round 2}} Mb]|n/a }}
| data23b = {{#ifexpr:{{#if:{{{Mm_GenLoc_chr|}}}|1|0}}*{{#if:{{{Mm_GenLoc_start|}}}|1|0}}*{{#if:{{{Mm_GenLoc_end|}}}|1|0}}|[http://genome.ucsc.edu/cgi-bin/hgTracks?org=Mouse{{#if:{{{Mm_GenLoc_db|}}}|&db={{{Mm_GenLoc_db}}}|}}&position=chr{{{Mm_GenLoc_chr}}}:{{{Mm_GenLoc_start}}}-{{{Mm_GenLoc_end}}} Chr {{{Mm_GenLoc_chr}}}: {{#expr:{{{Mm_GenLoc_start}}} / 1000000 round 2}} – {{#expr:{{{Mm_GenLoc_end}}} / 1000000 round 2}} Mb]|n/a }}

| label24 = ]] .. "[[PubMed]]" .. [[ search
| data24a = {{#if:{{#invoke:Wikidata|getValue|P351|{{{entrez|FETCH_WIKIDATA}}} }}|[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Link&LinkName=gene_pubmed&from_uid={{#invoke:Wikidata|getValue|P351|{{{entrez|FETCH_WIKIDATA}}} }}]|n/a }}
| data24b = {{#if:{{{Mm_EntrezGene|}}}|[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Link&LinkName=gene_pubmed&from_uid={{{Mm_EntrezGene}}}]|n/a }}

}}]]

infobox_string3 =
"<nowiki>" ..
"|header1 = dds" ..
"|label1 = label1" ..
"|data1 = " ..
"|data1a = data1a" ..
"|data1b = data1" ..
"|data1c = data1c" ..
"<nowiki/>"

--return entity['aliases']['en'][1]['value']
return infobox_string

end

function p.get_aliases(frame)
entity = mw.wikibase.getEntityObject(frame.args['from'])

a = ''
if entity['aliases'] ~= nil then
test = entity['aliases']['en']
for key, value in ipairs(test) do
a = a .. ', ' .. value['value']
end

return a
end

end

return p

Module:Sandbox/Sebotic/query test - Revision history

imported>Sebotic at 23:49, 18 September 2015