imported>SWinxy: Range maps, synonyms, text-align: left;, trinomial no longer tries to filter, misspelling

2022-09-12T20:51:25Z

Range maps, synonyms, text-align: left;, trinomial no longer tries to filter, misspelling

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local p = {}

local infobox = require("Module:Infobox")
local infoboxImage = require("Module:InfoboxImage")
local arguments = require("Module:Arguments")
local ifPreview = require("Module:If preview")

local colors = {
animalia = "ebebd2",
archaea = "c3f5fa",
archaeplastida = "b4fab4",
bacteria = "dcebf5",
eukaryota = "f5d7ff",
fungi = "91fafa",
incertae_sedis = "faf0e6",
sar = "c8fa50",
veterovata = "fafadc",
virus = "fafabe",
}

-- aliases that use the same color
-- TODO: combine the tables?
local colorAliases = {
animal = "animalia",

nanoarchaeota = "archaea",
nanarchaeota = "archaea",
korarchaeota = "archaea",
thaumarchaeota = "archaea",
crenarchaeota = "archaea",
euryarchaeota = "archaea",

plantae = "archaeplastida",
plant = "archaeplastida",
viridiplantae = "archaeplastida",

firmicutes = "bacteria",
eubacteria = "bacteria",

eukaryote = "eukaryota",
eukarya = "eukaryota",
excavata = "eukaryota",
excavates = "eukaryota",
protista = "eukaryota",
protists = "eukaryota",
amoebozoa = "eukaryota",
opisthokonta = "eukaryota",
choanozoa = "eukaryota",

acritarcha = "incertae_sedis",

chromalveolata = "sar",

viroid = "virus",
viroids = "virus",
viruses = "virus",
i = "virus",
ii = "virus",
iii = "virus",
iv = "virus",
v = "virus",
vi = "virus",
vii = "virus",
vii = "virus",
}

-- This table shows which order the color search should go
local taxonOrder = {
"phylum", "unranked_phylum", "divisio", "unranked_superdivisio", "superphylum", "unranked_superphylum", "superdivision", "unranked_superdivisio",
"subregnum", "unranked_subregnum", "regnum", "unranked_regnum", "superregnum", "unranked_superregnum", "domain", "unranked_domain", "virus_group"
}

-- Gets the background color as a hex code, if possible
--
-- @param args the arguments passed in to the template
--
-- @return a hex color, or nil if no color should be shown
local function getColor(args)
for _, taxon in ipairs(taxonOrder) do
local v = args[taxon]
if v then
local delinked = mw.ustring.gsub(mw.ustring.lower(v), "[\]\[']", "") -- delink, converting "[[''name'']]" to "name"
local i = mw.ustring.find(delinked, "|")
local sanitized = i and mw.ustring.sub(delinked, 0, i - 1) or delinked -- get "abx" from "abc|xyz"
local hex = colors[sanitized] or colors[colorAliases[sanitized]]
if hex then
return hex
end
end
end
end

local classification = {
{ arg_name = "superdomain", label = "Superdomain" },
{ arg_name = "domain", label = "Domain" },
{ arg_name = "superregnum", label = "Superkingdom" },
{ arg_name = "regnum", label = "Kingdom" },
{ arg_name = "subregnum", label = "Subkingdom" },
{ arg_name = "superdivisio", label = "Superdivision" },
{ arg_name = "superphylum", label = "Superphylum" },
{ arg_name = "divisio", label = "Division" },
{ arg_name = "phylum", label = "Phylum" },
{ arg_name = "subdivisio", label = "Subdivision" },
{ arg_name = "subphylum", label = "Subphylum" },
{ arg_name = "infraphylum", label = "Infraphylum" },
{ arg_name = "microphylum", label = "Microphylum" },
{ arg_name = "nanophylum", label = "Nanophylum" },
{ arg_name = "superclassis", label = "Superclass" },
{ arg_name = "classis", label = "Class" },
{ arg_name = "subclassis", label = "Subclass" },
{ arg_name = "infraclassis", "Infraclass" },
{ arg_name = "magnordo", label = "Magnorder" },
{ arg_name = "superordo", label = "Superorder" },
{ arg_name = "ordo", label = "Order" },
{ arg_name = "subordo", label = "Suborder" },
{ arg_name = "infraordo", label = "Infraorder" },
{ arg_name = "parvordo", label = "Parvorder" },
{ arg_name = "zoodivisio", label = "Division" },
{ arg_name = "zoosectio", label = "Section" },
{ arg_name = "zoosubsectio", label = "Subsection" },
{ arg_name = "superfamilia", label = "Superfamily" },
{ arg_name = "familia", label = "Family" },
{ arg_name = "subfamilia", label = "Subfamily" },
{ arg_name = "supertribus", label = "Supertribe" },
{ arg_name = "tribus", label = "Tribe" },
{ arg_name = "subtribus", label = "Subtribe" },
{ arg_name = "alliance", label = "''Alliance''" },
{ arg_name = "genus", label = "Genus" },
{ arg_name = "subgenus", label = "Subgenus" },
{ arg_name = "sectio", label = "Section" },
{ arg_name = "subsectio", label = "Subsection" },
{ arg_name = "series", label = "Series" },
{ arg_name = "subseries", label = "Subseries" },
{ arg_name = "species_group", label = "''Species group''" },
{ arg_name = "species_subgroup", label = "''Species subgroup''" },
{ arg_name = "species_complex", label = "''Species complex''" },
{ arg_name = "species", label = "Species" },
{ arg_name = "subspecies", label = "Subspecies" },
{ arg_name = "variety", label = "Variety" }, -- no unranked
{ arg_name = "varias", label = "Variety" }, -- no unranked; alias of variety
{ arg_name = "forma", label = "Form" }, -- no unranked
}

-- InfoboxImage: [[File:Status <status_system> <file>.svg|link=|alt=<category>]]
-- AddCaption: <label>
-- AddCategory: [[Category:<category>]]
local statusSystems = {
["iucn2.3"] = {
link = "IUCN Red List",
EX = { file = "EX", label = "[[Extinct]]", category = "IUCN Red List extinct species" },
EW = { file = "EW", label = "[[Extinct in the wild]]", category = "IUCN Red List extinct in the wild species" },
CR = { file = "CR", label = "[[Critically endangered]]", category = "IUCN Red List critically endangered species" },
EN = { file = "EN", label = "[[Endangered species|Endangered]]", category = "IUCN Red List endangered species" },
VU = { file = "VU", label = "[[Vulnerable species|Vulnerable]]", category = "IUCN Red List vulnerable species" },
LR = {file = "blank", label = "Lower risk", category = "Invalid conservation status" },
CD = { file = "CD", label = "[[Conservation dependent]]", category = "IUCN Red List conservation dependent species" },
["LR/CD"] = { file = "CD", label = "[[Conservation dependent]]", category = "IUCN Red List conservation dependent species" }, -- duplicate
NT = { file = "NT", label = "[[Near threatened]]", category = "IUCN Red List near threatened species" },
["LR/NT"] = { file = "NT", label = "[[Near threatened]]", category = "IUCN Red List near threatened species" }, -- duplicate
LC = { file = "LC", label = "[[Least concern]]", category = "IUCN Red List near threatened species" },
["LR/LC"] = { file = "LC", label = "[[Least concern]]", category = "IUCN Red List near threatened species" },
DD = { file = "blank", label = "[[Least deficient]]", category = "IUCN Red List data deficient species" },
NE = { label = "''Not evaluated''" },
NR = { label = "''Not recognized''" },
PE = { file = "CR", label = "[[Critically endangered]], possibly extinct", category = "IUCN Red List critically endangered species" },
PEW = { file = "CR", label = "[[Critically endangered]], possibly extinct in the wild", category = "IUCN Red List critically endangered species" },
},
["iucn3.1"] = {
link = "IUCN Red List",
EX = { file = "EX", label = "[[Extinct]]", category = "IUCN Red List extinct species" },
EW = { file = "EW", label = "[[Extinct in the wild]]", category = "IUCN Red List extinct in the wild species" },
CR = { file = "CR", label = "[[Critically endangered species|Critically endangered]]", category = "IUCN Red List critically endangered species" },
EN = { file = "EN", label = "[[Endangered species (IUCN status)|Endangered]]", category = "IUCN Red List endangered species" },
VU = { file = "VU", label = "[[Vulnerable species|Vulnerable]]", category = "IUCN Red List vulnerable species" },
NT = { file = "NT", label = "[[Near threatened]]", category = "IUCN Red List near threatened species" },
LC = { file = "LC", label = "[[Least concern]]", category = "IUCN Red List least concern species" },
DD = { file = "blank", label = "[[Data deficient]]", category = "IUCN Red List data deficient species" },
NE = { label = "''Not evaluated''" },
NR = { label = "''Not recognized''" },
PE = { file = "CR", label = "[[Critically endangered]]", category = "IUCN Red List critically endangered species" },
PEW = { file = "CR", label = "[[Critically endangered]]", category = "IUCN Red List critically endangered species" },
},
["epbc"] = {
link = "EPBC Act",
EX = { file = "EX", label = "[[Extinct]]", category = "EPBC Act extinct biota" },
EW = { file = "EW", label = "[[Extinct in the wild]]", category = "EPBC Act extinct in the wild biota" },
CR = { file = "CR", label = "[[Critically endangered]]", category = "EPBC Act critically endangered biota" },
EN = { file = "EN", label = "[[Endangered]]", category = "EPBC Act endangered biota" },
VU = { file = "VU", label = "[[Vulnerable species|Vulnerable]]", category = "EPBC Act vulnerable biota" },
CD = { file = "CD", label = "[[Conservation dependent]]", category = "EPBC Act conservation dependent biota" },
DL = { file = "DL", label = "Delisted" },
},
}

function p.main(frame)
local args = arguments.getArgs(frame)
return p._main(args, frame)
end

-- Helper function to dynamically retrieve the taxon "authority"
-- and present it in paretheses
--
-- @param args the table of arguments passed into the template
-- @param taxon the taxon to check
--
-- @return nil or text to serve as the taxon name and its authority
local function authorityHelp(args, taxon)
if args[taxon] then
local authority = args[taxon .. "_authority"]
return args[taxon] .. (authority and " (" .. authority .. ")" or "") -- when authority is nil no parentheses appear
end
end

function p._main(args, frame)

local warnings = {} -- warnings to display on preview
local passing = {} -- arguments passed to Module:Infobox

-- Safely replace spaces in parameters with underscores, removing the original parameter and sending a warning
for k, _ in pairs(args) do
if mw.ustring.find(k, " ") then
local k1 = mw.ustring.gsub(s, " ", "_")
if not args[k1] then
table.insert(warnings, "deprecated parameter \"" .. k .. "\". Please use \"" .. k1 .. "\" instead.")
args[k1] = args[k] -- copy value
args[k] = nil -- empty
else
table.insert(warnings, "found \"" .. k .. "\" and \"" .. k1 .. "\". Using \"" .. k1 .. "\" instead.")
end
end
end

if args.name then
passing.above = args.name
elseif args.genus or args.species or args.binomial then
local title = mw.title.getCurrentTitle().baseText
local g = mw.ustring.gsub(args.genus or args.species or args.binomial, "'", "")
if title == g or "<abbr title=\"Extinct\" aria-label=\"Extinct\" style=\"border: none; text-decoration: none; cursor: inherit; font-weight: normal; font-style: normal;\">†</abbr>" .. title == g or "†" .. title == g then
passing.above = "''" .. g .. "''"
-- TODO: add {{Italic title}}
else
passing.above = title
end
else
passing.above = mw.title.getCurrentTitle().baseText
end

if args.fossil_range then
passing.subheader = "Temporal range: " .. args.fossil_range
end

-- apply header styles
local hex = args.color_as or args.colour_as or getColor(args)
if hex then
local style = "background-color: #" .. hex .. ";"
passing.abovestyle = style
passing.subheaderstyle = style
passing.headerstyle = style
end

if args.image then
passing.image = infoboxImage.InfoboxImage({args = {image = args.image, upright = args.upright or args.image_upright, alt = args.alt or args.image_alt}})
passing.caption = args.caption or args.image_caption
end
if args.image2 then
passing.image2 = infoboxImage.InfoboxImage({args = {image = args.image2, upright = args.upright2 or args.image2_upright, alt = args.alt2 or args.image2_alt}})
passing.caption2 = args.caption2 or args.image2_caption
end

local i = 1

-- Embed photos into the infobox via frame:expandTemplate
-- Trying to call Module:Infobox keeps the previous state
if args.status or args.status2 then
local subbox = {
child = "yes",
}

if args.status and args.status_system then
args.status = mw.ustring.upper(args.status)
if args.status_system == "IUCN2.3" or args.status_system == "IUCN3.1" then
args.status_system = mw.ustring.lower(args.status_system)
end

if statusSystems[args.status_system] and statusSystems[args.status_system][args.status] then
local x = statusSystems[args.status_system][args.status]
subbox.image1 = infoboxImage.InfoboxImage({args = { image = "Status " .. args.status_system .. " " .. args.status .. ".svg", alt = (x.category or nil)}})
subbox.caption1 = x.label .. " ([[" .. statusSystems[args.status_system].link .. "|" .. args.status_system .. "]])" .. (args.status_ref or "")
end
end

if args.status2 and args.status2_system then
args.status2 = mw.ustring.upper(args.status2)
if args.status2_system == "IUCN2.3" or args.status2_system == "IUCN3.1" then
args.status2_system = mw.ustring.lower(args.status2_system)
end

if statusSystems[args.status2_system] and statusSystems[args.status2_system][args.status2] then
local x = statusSystems[args.status2_system][args.status2]
subbox.image2 = infoboxImage.InfoboxImage({args = { image = "Status " .. args.status2_system .. " " .. args.status .. ".svg", alt = (x.category or nil)}})
subbox.caption2 = x.label .. " ([[" .. statusSystems[args.status2_system].link .. "|" .. args.status2_system .. "]])" .. (args.status2_ref or "")
end
end

passing["header" .. i] = "[[Conservation status]]"
passing["data" .. i + 1] = frame:expandTemplate({title = "infobox", args = subbox})

i = i + 2
end

if args.virus or args.virus_group then
passing["header" .. i] = "[[Virus classification]]"
elseif args.ichnos then
passing["header" .. i] = "[[Trace fossil classification]]"
elseif args.veterovata then
passing["header" .. i] = "[[Egg fossil classification]]"
else
passing["header" .. i] = "[[Scientific classification]]"
end

i = i + 1

if args.virus_group then
local g = {
i = "Group I ([[dsDNA]])",
ii = "Group II ([[ssDNA]])",
iii = "Group III ([[dsRDNA]])",
iv = "Group IV ([[(+)ssRNA]])",
v = "Group V ([[(-)ssRNA]])",
vi = "Group VI ([[ssRNA-RT]])",
["vi/vii"] = "Groups VI and VII",
vii = "Group VII ([[dsDNA-RT]])",
}

passing["label" .. i] = "Virus group"
passing["data" .. i] = g[args.virus_group] or args.virus_group
i = i + 1
end

for _, t in ipairs(classification) do
local k = t.arg_name
local v = t.label
if args["unranked_" .. k] then
passing["label" .. i] = "(unranked)"
passing["data" .. i] = authorityHelp(args, "unranked_" .. k)
i = i + 1
end
if args[k] then
passing["label" .. i] = v
passing["data" .. i] = authorityHelp(args, k)
i = i + 1
end
end

if args.virus_infrasp and not args.virus_infrasp_rank then
table.insert(warnings, "\"virus_infrasp_rank\" missing")
elseif args.virus_infrasp then
passing["label" .. i] = args.virus_infrasp_rank
end

if args.binomial then
passing["header" .. i] = "[[Binomial name]]"
passing["data" .. i + 1] = authorityHelp(args, "binomial")
i = i + 2
end

if args.trinomial then
local g = {
animalia = "Trinomen",
plantae = "Infraspecific name (botany)",
fungi = "Infraspecific name (botany)",
["fungus|fungi"] = "Infraspecific name (botany)",
archaeplastida = "Infraspecific name (botany)"
}
passing["header" .. i] = "[[" .. (g[args.trinomial] or "Trinomial nomenclature") .. "|Trinomial name]]"
passing["data" .. i + 1] = authorityHelp(args, "trinomial")
i = i + 2
end

if args.range_map then
passing["data" .. i] = frame:expandTemplate({title = "Infobox", args = { child = "yes", image = infoboxImage.InfoboxImage({args = {image = args.range_map, alt = args.range_map_alt, upright = args.range_map_upright}}), caption = args.range_map_caption}})
i = i + 1
end

if args.range_map2 then
passing["data" .. i] = frame:expandTemplate({title = "Infobox", args = { child = "yes", image = infoboxImage.InfoboxImage({args = {image = args.range_map2, alt = args.range_map2_alt, upright = args.range_map2_upright}}), caption = args.range_map2_caption}})
i = i + 1
end

if args.range_map3 then
passing["data" .. i] = frame:expandTemplate({title = "Infobox", args = { child = "yes", image = infoboxImage.InfoboxImage({args = {image = args.range_map3, alt = args.range_map3_alt, upright = args.range_map3_upright}}), caption = args.range_map3_caption}})
i = i + 1
end

if args.range_map4 then
passing["data" .. i] = frame:expandTemplate({title = "Infobox", args = { child = "yes", image = infoboxImage.InfoboxImage({args = {image = args.range_map4, alt = args.range_map4_alt, upright = args.range_map4_upright}}), caption = args.range_map4_caption}})
i = i + 1
end

if args.type_genus then
passing["header" .. i] = "[[Type ichnogenus]]"
passing["data" .. i + 1] = authorityHelp(args, "type_genus")
i = i + 2
end

if args.type_oogenus then
passing["header" .. i] = "[[Type oogenus]]"
passing["data" .. i + 1] = authorityHelp(args, "type_oogenus")
i = i + 2
end

if args.type_species then
passing["header" .. i] = "[[Type species]]"
passing["data" .. i + 1] = authorityHelp(args, "type_species")
i = i + 2
end

if args.type_oospecies then
passing["header" .. i] = "[[Type oospecies]]"
passing["data" .. i + 1] = authorityHelp(args, "type_oospecies")
i = i + 2
end

if args.type_strain then
passing["header" .. i] = "[[Type strain]]"
passing["data" .. i + 1] = authorityHelp(args, "type_strain") .. (args.type_strain_ref or "")
i = i + 2
end

if args.subdivision then
mw.log(args.subdivision)
passing["header" .. i] = args.subdivision_ranks or "Species" .. (args.subdivision_ref or "")
passing["data" .. i + 1] = "<div style=\"text-align: left;\">\n" .. args.subdivision .. "</div>"
i = i + 2
end

if args.possible_subdivision then
passing["header" .. i] = args.possible_subdivision_ranks or "Possible species" .. (args.possible_subdividion_ref or "")
passing["data" .. i + 1] = args.possible_subdivision
i = i + 2
end

if args.synonyms then
passing["header" .. i] = "[[Synonym (taxonomy)|Synonyms]]" .. ( args.synonyms_ref or "")
passing["data" .. i + 1] = "<div style=\"text-align: left;\">\n" .. args.synonyms .. "</div>"
end

local out = infobox.infobox(passing)

table.insert(warnings, "Help!")

for _, warning in ipairs(warnings) do
local w = ifPreview._warning({warning})
if w and not w == '' then
out = out .. w
end
end

return out
end

return p

Module:Taxobox - Revision history

imported>SWinxy: Range maps, synonyms, text-align: left;, trinomial no longer tries to filter, misspelling